Software

inStrain

inStrain is python program for analysis of co-occurring genome populations from metagenomes that allows highly accurate genome comparisons, analysis of coverage, microdiversity, and linkage, and sensitive SNP detection with gene localization.

• Source code is available on GitHub

• Manual, installation instructions, and expected output are at available at ReadTheDocs

• Publication is available in Nature Biotechnology and on bioRxiv

dRep

dRep is a python program for rapidly comparing large numbers of genomes. dRep can also “de-replicate” a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set.

• Source code is available on GitHub

• Manual, installation instructions, and API are at available at ReadTheDocs

• Publication is available at The ISME Journal and on bioRxiv

Other Miscellaneous Software